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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, and … of environments. ENVnet allows us to uncover globally distributed molecules with conserved structures, offering fresh …
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How to Submit Sequencing Samples
Sample QC Protocol JGI’s Total RNA Sample QC Protocol JGI’s Small RNA Sample QC Protocol DNA Extraction 101 : tips, … that you are interested in, then click the blue “reports” button on the right side. The Project Overview report …
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Natural Prodcast Episode 3: The Primer, Part 3
… side of the field, and it’s a little hard to find in print, but we live in the information age and the ebook version is … parallel with that, the field of molecular biology got more sophisticated around the 80s and the 90s. And so we started … of enzymes and sometimes those are referred to as “small molecules” because proteins are actually molecules …
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Natural Prodcast Episode 24: Jackie Winter and SMC
A little bit of a bonus episode, since I’m off schedule, but this is an important one that wanted to get out there as … the normal amount that we get, which is already a fairly small number. We’re a very niche podcast. And so maybe if we … what? There must be a lot of competition as the lake gets smaller. These organisms that live in the water column are …
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Natural Prodcast Episode 9: Roger Linington
… as an expert in natural product structure elucidation, but more recently, he’s been leading an effort to build The … Panama, straight out of my graduate school, and was given a small lab in the National Science Center there and ran this … it gave us a basal training set we could use to build more sophisticated tools, because now we had a very reasonably …
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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of … if you’re a new investigator who wants to try out something smaller scale, or if you’re just curious to know more, then … a good fit for our annual CSP proposal call. Now we have smaller calls, the new investigator proposal call where …
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Plant Program
… plants are a major source of chemical production and contribute to a healthier planet and a thriving future. … The … The pangenomes enable the exploration and identification of small and large structural variation — this variation drives … processes through model laboratory ecosystems. They are small plastic growth chambers where plants grow without …
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Metabolomics
… genome annotation, improves understanding of the role small molecules play in diverse biological systems, sheds …
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Natural Prodcast Episode 5: Brad Moore
… fun of me a lot, though I actually edited most of that out. But anyway, here’s our conversation with one of my favorite … So we began to sequence that genome – it was a relatively small genome, about five and a half million base pairs. It … to accomplish. And so JGI was not overly thrilled about jumping back into the ocean to do more seaweed genomes. …
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Natural Prodcast Episode 15: Katherine Duncan
… that would be Katherine. Dan Udwary: Right. Kate Duncan: But most people that know me call me Kate. Dan Udwary: … around countries. And I was actually in Croatia on a small island off the coast in the Adriatic Sea, and I … Society got behind us on this and decided to kind of champion this as the way forward for people who worked on …
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Natural Prodcast Episode 16: Marcy Balunas
… right. There’s many different avenues toward chemistry. But that’s kind of where I had you. How would you describe … distributed on each egg?  MARCY: So you are definitely jumping into the realm of what we don’t know. And so my … chemistry but I think that’s not necessarily – There are small molecules that host make as well. And so hosts and …
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Boosting Small Molecule Production in Super “Soup”
… approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free … grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team also used a similar rewiring strategy to produce the small molecules glycerol and itaconic acid to see how the …
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