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… vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …

… checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to process optimization and development …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

It’s been about a month now since we dropped our first six episodes, and now after gathering some feedback and … the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …

… the sequencing and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et … al. (2015) Microbial species delineation using whole genome sequences. Nucleic Acids Res. 43(14):6761-71 Kyrpides NC et …

… their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … in length, cloned into vector of choice Glycerol stock of sequence verified clone 170/NA DNA Synthesis Constructs …

… learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … on a different nutrient media– or low-nutrient. And over a six-month period, we found 20 strains that became visible. … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …

… pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… the gap between cultivated and uncultivated Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … P., Kyrpides N. C. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.” Nat …

… is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew that secondary metabolism is …