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… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could … The Metagenome Program focuses on the high-throughput sequencing …

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … the JGI’s focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of …

… bobtail squid has two organs that solely house– whose sole function is to house bacterial associates. And so the one … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … We then investigate the coding potential to find novel functions that may impact microbiome structure and …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … applications. By expanding our knowledge of microbial functions and interactions, the Microbial Program supports …

… The Community Science Program (CSP) provides the scientific … synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate … mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs …

… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … as needed), and the work plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on …