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Plant Program
… will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on Phytozome … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in KBase …
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Plant-Microbial Interactions Group
… single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association …
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Natural Prodcast Episode 23: Aaron Puri
… bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a readout of activity. And I … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. … appeared in  Nature Communication s. The team studied  Brachypodium hybridum , a polyploid resulting from the … crop switchgrass and a JGI Flagship Plant. All three  Brachypodium  grasses have small genomes, short life cycles …
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Primer and platform effects on 16S rRNA tag sequencing
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Natural Prodcast Episode 21: Elizabeth Parkinson
… allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that …
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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Brachypodium distachyon genotypes vary in resistance to Rhizoctonia solani AG8
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Agrobacterium‐Mediated Transformation of Brachypodium distachyon
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John Vogel
… genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the … evolution characterizes distinct lineages of allotetraploid Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: … genome evolution revealed by a pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature …
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Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum
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Brachypodium as an emerging model for cereal–pathogen interactions
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