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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, … performed in its User Facilities, is a legally binding contract.   All User researchers must have their … After your proposal is approved, the Contracts Officer will send required paperwork to your …
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Sequencing Technologies & Products
… which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams … through end-to-end automation — and further advancing sequence applications, single cell genomics, DNA synthesis, … [QA/QC]), large-scale liquid handling automation, and sequence analysis. …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … challenge our understanding of viral complexity and evolution Our research focuses on discovering and characterizing …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work … The Metagenome Program focuses on the high-throughput sequencing of microbial communities …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize … So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … a table of standard product offerings, including a description of the product and deliverables as well as target cycle … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce … Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … help solve energy and environmental challenges. Maximizing soybean yield is critical to energy independence in the U.S. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … The researcher then submits a proposal for consideration in the next review cycle. All proposals undergo …
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