Search

… Data produced and released by the US Department of Energy … Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … research data and analysis products (referred to as “data” for the remainder of this policy) produced through all user …

… offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … way. We also work with our partners to ensure platforms are future-ready for advancements enabled by …

… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …

… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can … We have two key priorities:  The JGI is involved in efforts to integrate data in support of new research questions …

… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting … sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC …

… through end-to-end automation — and further advancing sequence applications, single cell genomics, DNA synthesis, … [QA/QC]), large-scale liquid handling automation, and sequence analysis. … An assay used for profiling transcription factor binding sites across … samples in 96-well plates on automated liquid handler platforms, substantially increasing efficiency and scalability. …

… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. …

… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … alignment files 384/454 Fungal Transcriptome RNA for expression profiling and genome annotation (single …

… of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s project. See below for details on each step. … Before work can start on any approved proposal – including the …

… research project are appropriately recognized and credited for their work, while also adhering to the authorship … published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other …