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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are … Plant microbiomes hold the amazing ability to influence plant development, fitness and …
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Metabolomics Program
… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to … of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … terrestrial biogeochemical cycling and inter-organismal interactions, which are critical for advancing sustainable …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand … Exploring the fascinating world of giant viruses, which challenge …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy …
Learn more
Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … then we were using these probes to look at host pathogen interactions mostly with like enteric bacteria. And I really … expression hosts like maybe in many fields now like in cyanobacteria or even [ Streptomyces ] coelicolor you’ll see …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … While an ever-increasing number of phage and virus genomes have been …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the sponges talk to each other? ERIC:   He was looking at interactions between sponges and other organisms. So one of … we were working with tunicates, and tunicates living with cyanobacteria, and various other types of bacteria. So I got …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … genomes from metagenomes, we gain insights into microbial interactions, evolution, and adaptation, ultimately …
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Natural Prodcast Episode 16: Marcy Balunas
… Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … converged on the study of host-microbe chemistry. And the interactions– As much as we incorporate loads of different … ethnobotany in Brazil.  And so I went to the Amazon rainforest and talked to people who as part of a program …
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