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Micro-Scale Applications Group
Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical …
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Genome Project Standards in a New Era of Sequencing
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … a foolproof way, then if you imagine, say, if you had three pieces like an A, B and a C, you can make ABC very, very … millions of years to find the precursor sequences. Those species are long dead. And if the DNA sequences have been …
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Natural Prodcast
… metabolites all refer to the chemicals that make species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … us on that. You know, as an added benefit, the S. tropica species also makes an anticancer agent that today is in …
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Giant virus biology and diversity in the era of genome-resolved metagenomics
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Natural Prodcast Episode 21: Elizabeth Parkinson
Pharmacology there. We talked about several different pieces of her work, including bacterial quorum sensing and … outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY PARKINSON: So …
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A Guide to Conquer the Biological Network Era Using Graph Theory
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … updateable transcriptome resource spanning diverse plant species. It was developed to improve plant genome … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … “It’s a reminder of the urgency to cultivate new microbial species.” Targeted Explorations for Understanding the …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with the people behind the science. Hear …
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