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… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and … on the high-throughput sequencing of microbial communities to uncover the complex interactions and functions that shape …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The …

… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … ensure platforms are future-ready for advancements enabled by artificial intelligence and other tools. By bringing … Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these …

… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … things. But before that, I wanted to tell a quick story. Looking back, the year was probably 2010, 2011, I was a, uh- … . So this is an algorithm that identifies, using machine learning models, that very tiny precursor peptide, encoding …

… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …

… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable …

… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … 11, 237 Roux et al., 2023. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses …

… episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British … for Ray Andersen there, and had a very enjoyable time learning about natural products science. DAN:  Yeah, great. … hand, in order to build a machine learning model that would look at all of the data that’s in PubMed, and pick out …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … metabolites in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the …