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The IMG group owns and maintains integral components of JGI’s … mis-assignment of species names in genomes spanning nearly 18% of all existing species. Additionally, the complete … datasets, as long as they agree with the IMG/M data release policy and follow the metadata requirements for …

… types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they can actually travel. … to help our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there … and InterProScan. And all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a …

… via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   … (Phycocosm) … In general, data generated by the JGI are released to the public via JGI portals and the NCBI a year …

Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral populations. …

… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … the promiscuity of one of the previously best studied SVR receptors. And so previously, a lot of these have been … can activate these, utilizing some of these already synthesized molecules. DAN: OK. These receptors are coming from …

Data produced and released by the US Department of Energy (DOE) Joint Genome … JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA or GenBank; … outside repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a … cluster. So either both of those pools have to increase in size dramatically, or there has to be a significant …

… tackle more functional questions. For example, we can synthesize a gene and then figure out what it might be doing … project, can you talk a little bit about the data release policy? TANJA WOYKE: Yeah, absolutely. So we do have … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …

… with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … directly isolated from environmental samples.  … The IMG/M system serves as a community resource for comparative … resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly available collection …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … in virus:host interaction and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of … group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction …

… of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … even in primary metabolism or in certain snips of viruses or something. I don’t know. Then I think making sure … in the past, we’ve had these monolithic databases, NCBI and IMG , that have a lot of data and really useful data, really …