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The IMG group owns and maintains integral components of JGI’s … users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial … and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of this project, …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral populations. …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … that we’ve put together to try and create an open source database of all known microbial natural products. So if you … cluster. So either both of those pools have to increase in size dramatically, or there has to be a significant …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … in virus:host interaction and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of … ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses revealed as pervasive in bacteria and archaea across …

… types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they can actually travel. … to help our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there … and InterProScan. And all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a …

… with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … directly isolated from environmental samples.  … The IMG/M system serves as a community resource for comparative … resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly available collection …

… from which potentially natural product could be biosynthesized, then you need to develop enabling technologies. ie … so everybody, readers of the library, can come to our databases and look for the specific information they are … fundamental medicine. And this is mass data, the huge databases, is probably also going to inspire us to really …

… of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … even in primary metabolism or in certain snips of viruses or something. I don’t know. Then I think making sure … in the past, we’ve had these monolithic databases, NCBI and IMG , that have a lot of data and really useful data, really …

… (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments … amplification prior to sequencing. Assembly, annotation ( IMG/M ) Depends on project Metagenome Minimal Draft …

… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz et al. … of life. Microbiome. 5 (1), 1-6 Schulz et al. (2017) Giant viruses with an expanded complement of translation system …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, …

… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … are microbes that will actually redefine how you synthesize nucleotides. Stuff that are at the core of what we call … that in certain niches, ecological niches, probably Marc Chevrette ‘s contribution to talk about this, he’s very …