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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and … Office of Science National User Facilities into their research. In recognition of the increasingly collaborative and …
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JGI Workshop at SIMB NP Meeting
… and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the … the Synthetic Biology Pathway Engineering group. His research focus includes engineering of non-model yeasts for … of secondary metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award …
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Uri Neri
Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for … messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… – an EcoFAB. These small plastic growth chambers let researchers around the world compare their work consistently. And EcoFABs also work well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience … Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit white papers to the Community Science … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Exometabolite niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., Sun, …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance … changes in industry/DOE Advanced Scientific Computing Research (ASCR) facilities. It’s a leadership opportunity for …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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