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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. … selected with four focused on biofuels and bioproducts. For example, Sabeeha Merchant of the University of …
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Fishing for Novel Cellulose Degraders
The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its … a new genus level member of the novel candidate phylum Goldbacteria. They’ve proposed the name  Candidatus …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … State University, which archives and makes available for research over 100,000 samples and specimens of over 60 … co-hosted by the JGI and EMSL inviting researchers to apply for a FICUS proposal. Additionally, researchers may also …
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Methane Makers in Yosemite’s Lakes
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … the genomes of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole …
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Trent Northen
… large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the … more.  … B.S. in Chemical Engineering, University of California Santa Barbara Ph.D. in Chemistry and Biochemistry, … McGivern BB et al. Decrypting bacterial polyphenol metabolism in an anoxic wetland soil. …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due … 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for this proposal call? A(nswer): We work with people from …
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Tracking the Origins of Methane-Producing Microbes
… cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, the Mcr … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, I was not sure we could even complete … Boca Raton Community High School. “I can’t thank JGI enough for being willing to take a risk on a group of public high …
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Viruses Reprogram Cells into Different Virocells
… it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … approach to infecting and metabolically reprogramming the bacterial host, which was transformed into two very … different infection outcomes. reprogrammed the bacteria’s central carbon and energy metabolism, to obtain …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … download processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome … and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics Officer. JGI’s Portals, including Phytozome , IMG …
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