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Tina Clarke
… the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area … Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present Berkeley National …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Type IV Pili‐Associated Secretion of a Biofilm Matrix Protein From Clostridium perfringens That Forms Intermolecular Isopeptide Bonds
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Streamlining Regulon Identification in Bacteria
… regulation is critical to ensuring genes vital for growth and survival across various environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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