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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint … young in structures called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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The Busy World of Deep Sea Eruptions
… The ocean depths are vast and dark. But there are hotspots on the ocean floor — … thrive, and even support entire ecosystems. Hear from researchers Anna-Louise Reysenbach, Emily St. John, …
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Mateus Fiamenghi
… Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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Robert Bowers
… Bob uses single-cell genomics and metagenomics to explore how microbes influence people … studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the … plants to harness for bioenergy. In this episode, hear from Oak Ridge National Laboratory scientists who have … to making poplar an economical and sustainable source of energy and materials. …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to …
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