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Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae
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Draft Genomes of Geographically Distinct Strains and Progeny of the Ectomycorrhizal Basidiomycete Laccaria bicolor.
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … genes, but these genes mask the striking diversity of their genomic capabilities. According to Boeuf, 16S rRNA genes are … #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … the need for a more comprehensive exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
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Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress
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Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes
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Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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