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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … At that time, the field had surveyed many different soil communities for taxonomic diversity. These studies could …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … falls within that single beam. When it comes to microbial communities, scientists have historically been unable to see … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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First Monoploid Reference Sequence of Sugarcane
… and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … the highly polyploid sugarcane, an international team of researchers has successfully assembled a first monoploid …
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Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments
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Investigation of recombination-intense viral groups and their genes in the Earth’s virome
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CheckV assesses the quality and completeness of metagenome-assembled viral genomes
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Diversity of active viral infections within the Sphagnum microbiome
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Assembly of Viral Metagenomes from Yellowstone Hot Springs▿ †
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Viromics approaches for the study of viral diversity and ecology in microbiomes
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Coastal bacteria and protists assimilate viral carbon and nitrogen
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