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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals … mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about …
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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10 From JGI on the 2019 Highly Cited Researchers List
… Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs … last year: Kerrie Barry and Jeremy Schmutz worked with a community of switchgrass researchers to conduct a … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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User Executive Committee Charter
… JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI … user meeting. The UEC also acts as a liaison to the user community and the broader scientific community and promotes …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … science, energy conversion and water treatment as well as microbial ecology with a focus on metabolism and ecosystem … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. … Through its partnership with NERSC and the DOE Energy Sciences Network …
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First Monoploid Reference Sequence of Sugarcane
… species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… the metabolomic analysis capability available through the  Community Science Program (CSP) . This includes mass … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …
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JGI Accepts 17 Proposals for Community Science Program
… total of 17 proposals have been approved through the annual Community Science Program (CSP) call of the U.S. Department … State University and colleagues are interested in the microbial communities that live on Alaska’s glacially … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address … as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …
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