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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to … The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … Several accepted proposals reflect JGI’s interest in algal research for bioenergy production and algae’s roles in …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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User Executive Committee Charter
… The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing … users and their science including technical capabilities offered, proposal review procedures, and the annual user … and cost; Communicate with the user community and bring forward user suggestions and concerns; Provide feedback and …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … with a view to developing a deeper understanding of sequence-based gene function. …
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Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’‐enriched enhanced biological phosphorus removal sludge
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Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture experiments showed …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing …
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Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
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JGIota: The Algae Nicknamed ‘Chlamy’
… UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other … in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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