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The Power of One, Amplified
… of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large … (~190°F), yet microbes thrive here. The communities in this extreme environment are often less diverse than those within …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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Serpentinization-Influenced Groundwater Harbors Extremely Low Diversity Microbial Communities Adapted to High pH
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Genomic sequencing of single microbial cells from environmental samples
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Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Laboratory (Berkeley Lab). The accepted proposals come from 80 full proposals, resulting from 95 letters of intent. … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny …
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Microbial communities associated with sympagic and planktonic habitats during a polar vortex influencing the North American Great Lakes Basin
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … and contribute to stabilizing streambanks, wildlife habitats and water-quality regulation. Focusing on the …
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Genomics of an extreme psychrophile, Psychromonas ingrahamii
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Understanding Wildfire Recovery, Starting in Soil
… of plants and animals, but with climate change driving more extreme wildfires, more and more forests are under threat. … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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