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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, …
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …
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Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris
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Functional genomics gives new insights into the ectomycorrhizal degradation of chitin
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Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … team found that both guilds express similar genes for degrading fungal cell walls, the so-called fungal necromass, …
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Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
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Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome‐resolved metagenomics
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Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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