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Simon Roux
… the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established and …
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA … Tips for High Molecular Weight DNA extraction: …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is … In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced …
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Industry Engagement Program
… leading industry and academic organizations with the DOE, National Laboratories, and User Facilities — as well as … and curated data to support AI applications. In an effort to lead AI-driven genomic innovation to advance … and state-of-the-art sample processing.  Our Biodesign platform enables users to test hypotheses via designed and …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are … EDGE platform. The Impact In order to gain more insights into Earth’s ecosystems, researchers must examine the … chemicals. They can also affect ecosystems by killing other cells. Over time, MGEs can help microbes gain a competitive …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms … of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and … stitch the pieces together and attempt to put them back into the original genomes. These metagenome-assembled …
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Vision, challenges and opportunities for a Plant Cell Atlas
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CTCF-mediated functional chromatin interactome in pluripotent cells
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One Bacterial Cell, One Complete Genome
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Sequencing of Genomes from Environmental Single Cells
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