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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … aspect of viruses in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … related 16S rRNA genes, but these genes mask the striking diversity of their genomic capabilities. According to Boeuf, …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … a computer could use to conduct a similar type of search in microbial and metagenomic databases. In this case, the …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal review procedures, and the annual user …
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Evolution of a Fungal Gene Expression Regulator
… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species of … User Facility, and others like it, are uncovering the true diversity of the fungal kingdom. The abundance of fungal …
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The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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Simon Roux
… research as part of the Metagenome Program. His responsibilities include the development of novel computational … focused around developing foundational knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research …
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Separation of life stages within anaerobic fungi (Neocallimastigomycota) highlights differences in global transcription and metabolism
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