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JGI Interns at UC Merced Earn CAMP Merit Awards
… the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions were recognized. The 5 UC Merced …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants …
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Enlarging Windows into Understanding Gene Functions
… bind quickly and efficiently in the genome by adding tagged transcription factors to a genomic DNA library. “It’s … their functional interpretation is as tough as it has been 10 years ago,” he said. “We thought about reconstructing … down plant materials, which could be useful for industrial biofuel production, and multicellular development. “DAP-Seq …
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JGI announces first round of 2023 New Investigator awardees
… Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are accepted …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do you offer scholarships and/or …
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Dan Rokhsar
… group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. … genomics is targeted towards the development of improved biofuel feedstocks and understanding and ultimately …
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JGI@25: Strengthening Soybean
… rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These … of fuel per acre to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published … of projects that point to the potential of seed oils as biofuel. After analyzing the original sequence, Gary Stacey …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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Ian Blaby
… cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of …
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Ancient Algae Reveal Secrets of Plant Evolution
… land for biomass production — that can be converted into biofuels and bioproducts — would further drive a strong … to Land: Plant Evolution to Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as … further supported by Austrian Science Fund (FWF) project 10.55776/P34181 to A.H. The work (proposal: …
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An Integrated Dataset to Understand Ecosystem Interaction
… their genetic diversity. They hold economic value as both biofuel feedstock and their role in carbon sequestration. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … For plants, boosting this relationship could improve biofuel feedstocks growing in nutrient-poor fields. “This is … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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