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… % Goal   FY 2025 Total   700.0 1,144.186 163% 8,585 8,640 100.6% Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … experimental capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new …

… 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … quite have the spatial resolution at tens of microns or 100 microns, whatever you want to call it. But NanoSIMS can … not mixing the tracer with the CO2 produced at the end. 10. Q:  Related to DNA-SIP, are there any special …

… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its … of Science User Facility, has discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …

… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS …

… is an ongoing collaborative effort to improve the emerging bioenergy crop switchgrass ( Panicum virgatum ), which has established 10 experimental gardens located in eight states spread … this complex species and also at the same time, take advantage of what we can do now with genomics to really make …

… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). …

… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, …

… the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions were recognized. The 5 UC Merced …

… the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the … Genome Inside: THE Bioenergy Tree …

… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants …

… Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are accepted …