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Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis
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Novel assembly strategy cracks open the mysteries of walnut genome evolution
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development … mass spectra with statistical significance. Nat Commun. 13, 2510 (2022). https://doi.org/10.1038/s41467-022-30118-9 … Berkeley Lab he serves on a number of committees and is the Strategy Mentor for the Berkeley Lab Biosciences …
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Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly*
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Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … are swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… instead of lysing them, which appears to be prevalent in marine environments, they were predicted to simply abide … the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … of virus can suggest a so-called “Kill the Winner” strategy: a virus infects a highly abundant host (a …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… north into Oregon and beyond. The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of the … association with the oaks. Another benefit of the removal strategy was to reduce fuel in the forest and diminish the … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide
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Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides
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Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
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Supercharging SIP in the Fungal Hyphosphere
Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, … steps. Ultimately, researchers found their updated strategy required one-sixth the labor of the manual process, … as an even more complex and dynamic environment. By further streamlining the process for studying such microbial …
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