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Mapping the Earth’s Hidden Fungal Kingdom
… in perspective, the genus Aspergillus has been evolving for 82 million years, making it nearly 30 times older than … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … The JGI recognized this opportunity early, developing standardized workflows to produce high-quality, comparable …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … metagenomes as a custom analysis, i.e. is not part of the standard analysis pipeline but can be done on request by the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … to functions and fungal species. Initially, mapping RNA sequences this way was challenging, according to Martin. … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … on sustaining our record of excellence and respect, and for principles of integrity, safety and reliability. As … role models for the community, demonstrating the highest standards of ethical conduct guided by the JGI and Berkeley …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI … pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … fill in the gaps,” she added. DSMZ not only preserves a standardized culture collection of international renown, …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your … address some of the most pressing challenges of our time. For more information, please visit  …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … segments used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced … This work was supported by the International Consortium for Sugarcane Biotechnology, as well as the South Green …
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A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops
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