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Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… threads in the mix. But in the Petri dish, the thin vermicelli-like threads floating delicately above the leaf debris are revealed to be single bacterial cells, visible to the naked eye. The … the entire cell.” The JGI team then used single cell genomics to analyze five of the bacterial cells on the …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… species? Or, do they tend to specialize, infecting just a single host? Another wrinkle in the mystery is that viruses … kill outright, replicating so thoroughly that they lyse the cell — a process called lytic infection. But some viruses … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat
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Workforce Development & Education Outreach
The JGI aims to inspire more students to enter the STEM workforce by fostering an understanding of our role in advancing the energy and environmental genomics research frontier.  Learn more about the JGI's … from high school to community college. … University of California, Merced … Alabama A&M University … CalTeach … Biotech …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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How to Target a Microbial Needle within a Community Haystack
… developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then … the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of microbes that …
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Who We Are
… around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most …
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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