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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers … enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User …
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not … The work by Cavicchioli’s team sheds light on the range of archaeal symbiotic lifestyles found in the Antarctic lakes … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … the world, expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, …
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FICUS-NERSC/KBASE
Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products …
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