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Making a Lichen Together
… in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues … lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. … in their finding that each lichen partner can sexually reproduce: genetic recombination during sex could increase the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Texas. Identifying and breeding varieties that have high productivity across a range of environments is becoming … common gardens were sequenced and assembled by the JGI, allowing the research team to conduct association mapping, … of California (UC), Berkeley, Rutgers University, USDA-ARS, Arizona Genomics Institute, University of Georgia, Athens, …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… for ways of making these experiments more repeatable and reproducible. Essentially, the aim is to ensure these … from Pacific Northwest National Laboratory, Northern Arizona University, Argonne National Laboratory and the … although reusability and reproducibility are still growing priorities for researchers in this area. “Surprisingly, …
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The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties
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The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s … his colleagues were able to convince the DOE and National Institute of Health that this effort would prove invaluable. … the human genome.  By 2000, a drafted human genome was produced by a joint effort between public and private sectors …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … biofuels ), enhance plant health, cause diseases, and produce antibiotics. Still, the team estimates that genomic …
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A Grass Model to Help Improve Giant Miscanthus
… giant miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into … literally towers over most researchers due to its prodigious capability for growth. While many desirable … Center, along with researchers from the Energy Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … grow, and then harvest for use as biofuels and other bioproducts. As any good cook knows, recipes can be refined for … growing them under conditions that simulated summer in Arizona. Scenedesmus  sp. NREL 46B-D3, which thrives both in …
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Wringing everything out with bioprospecting
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI … opportunity early, developing standardized workflows to produce high-quality, comparable genome assemblies across …
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Statement on the Use of Genomics Data
… Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … Sequence Database Collaboration (INSDC) has managed the growing corpus of sequence data for all organisms as a public … a better understanding of how changes may affect data-producing users and other users. After the RFI closes on …
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