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Mapping the microbiome milieu
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different … The Impact Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … part of a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis … available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let … has focused on producing high-quality reference genomes. By cataloguing a genome sequence for a line of sorghum, …
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A framework for human microbiome research
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Getting to the core of the gut microbiome
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A blueprint for contemporary studies of microbiomes
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Natural Prodcast Episode 16: Marcy Balunas
… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … switched to chemical engineering and realizing that wasn’t for me and eventually, I got to chemistry. And as I was … But you can carry that idea to bacteria for sure.   On your website and you’ve got some pubs on this. There is at least …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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A haplotype-resolved reference genome for Eucalyptus grandis
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Emiley Eloe-Fadrosh
… samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore … She conducted her postdoctoral training in human microbiome research at the Institute for Genome Sciences at …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope Carbon-13, … Organizing this workshop, too, was collaborative. Bruce Hungate and Egbert Schwartz of Northern Arizona University, …
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