Results

Reduced methane emissions in transgenic rice genotypes are associated with altered rhizosphere microbial hydrogen cycling
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The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus
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Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … detected in the samples. Simon Roux co-organized the Viral EcoGenomics & Applications (VEGA) Symposium series. …
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Animal-associated jumbo phages as widespread and active modulators of gut microbiome ecology and metabolism
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Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for … For further details, please reach out to the Group Lead …
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Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
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Methane Cycling Microbial Community Characteristics: Comparing Natural, Actively Extracted, Restored and Unrestored Boreal Peatlands
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute … the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is … ensure platforms are future-ready for advancements enabled by artificial intelligence and other tools. By bringing …
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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