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NOTICE Information from this server resides on a computer system … the United States Government nor the University of California nor any of their employees, makes any warranty, … provided that this Notice and any statement of authorship are reproduced on all copies. JGI is not responsible for the …

Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …

… hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …

The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … Among the long-term aims for bioenergy feedstock crops are increasing their yields and improving their abilities to …

States. They also provided multiple access points to the information. The team harnessed a community-science program to … resource that provides information at multiple scales from genes to the community level. The Impact Rivers are … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a … of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …

… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …

For the first time, a team analyzes the transcriptomes of a … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, …

… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, …