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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular … markers for classifying species and studying diversity in complex biological systems. By making the tools and data …
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Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth
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Partners
… and develops others providing complementary expertise to advance the science and serve as impact multipliers . The … with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the … Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with DOE …
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Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? We could unlock … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations.
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j5 DNA Assembly Design Automation
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What Happens Underground Influences Global Nutrient Cycles
… user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have … gene functions that may be relevant to both algae and land plants.  Within the biogeochemistry group, one of the four … on plant metabolism and particularly, what happens in the rhizosphere where plants, microbes and soil interact below …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and …
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