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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … of samples that would not be possible with traditional approaches. … Ph.D. in Marine Biology/Biochemistry, … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Novel approaches in function-driven single-cell genomics
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … their genomes can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s …
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From Textbook to Real World Applications
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Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience
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Differences in crop bacterial community structure between hoatzins from different geographical locations
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Cytochrome P450‐catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.)
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward advancing sugarcane … sugarcane was published as a step forward in this effort. Sequencing and assembling the genome required a custom …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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JGI Early Career Researchers Featured in mSystems Special Issue
Program head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an … (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on …
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An Integrative Computational Approach for Prioritization of Genomic Variants
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