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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria …
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Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont
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Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January … integrative biology. Researchers who are applying genomic sequence information to BER-funded activities of plant …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … known as “Chlamy” to those who study it) a powerful reference organism for studying photosynthesis and cell … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …   These experiments focused on two species at once: the model legume species  Medicago truncatula and the …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The … Plant Dataset …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … collapsed, while these issues are not commonly seen with reference isolates. “For secondary metabolite discovery in … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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