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Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules
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Evolutionary Origin and Functional Diversification of Aminotransferases
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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, … of Energy operated under Contract No. DE-AC02-05CH11231. …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] … this and deal with it is through these antibiotic- or antifungal-producing bacteria that live on the exoskeleton of …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant components and a key barrier …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a … genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … tools, allows  Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … The  M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. x giganteus ), a high-yield …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China … in forest ecosystems. By deciphering the fruiting-related decomposition mechanisms of morel with multi-omic …
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