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Reconstructing each cell's genome within complex microbial communities—dream or reality?
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades … the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall Loxahatchee …
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Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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Simon Roux
… research as part of the Metagenome Program. His responsibilities include the development of novel computational … global RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Into the darkness: the ecologies of novel ‘microbial dark matter’ phyla in an Antarctic lake
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — … mats — to reveal how these systems adapt and contribute to global biogeochemical cycles. Additional … will target sustainable energy solutions, focusing on lignocellulosic thermophiles and polymer degradation.  “We are …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is …
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Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
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Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils
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