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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is so … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication
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Cataloging the Microbes that Manage the Health of River Systems
Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … in the continental United States. They also provided multiple access points to the information. The team … analyses with their own data on the KBase platform, without having to download anything. The collaborative …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Finding the Fermenters
… compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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CoverM: Read alignment statistics for metagenomics.
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Data Ecosystem
To expand access to integrated data, improve tools and … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … extracted from a variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they …
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Young inversion with multiple linked QTLs under selection in a hybrid zone
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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