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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a … can be estimated. In short, the complexity of nutrients, constraints, etc. of natural environments shape specific …
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Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
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Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium)
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their …
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Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in … ecosystem modeling. In a different vein, characterizing CRISPR defense and anti-CRISPR mechanisms in a broader range …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  …
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Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11T)
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High-Quality Draft Genome Sequence of Fischerella thermalis JSC-11, a Siderophilic Cyanobacterium with Bioremediation Potential
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