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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … I have been in – working in secondary metabolism for almost 20 years now. Which when I did the math, that was a surprise … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more … other related organisms, requires using more specialized tools, skills and protocols,” explained Hiroshi Otani, an … user-available API’s offer a space to not just store data, but for the community to discuss those data and make …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, … reproductive, space and genome biology . The undeniable power of plants, and the lessons they can teach us, are why … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has …
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … support from different analysis. Most analyses strongly supported Olpidium as the closest relative of the …
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient
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Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional … additional phase of user-accessible project types, in which DNA-based molecules can be chromosomally integrated into a …
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