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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting …
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. The Science The … carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can …
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The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
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IMG/M: integrated genome and metagenome comparative data analysis system
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Improving Microbial Genome Annotations in an Integrated Database Context
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
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Tanja Woyke
… After studying the mechanism of action of antifungal natural … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild … genome infrastructure with a reasonably accessible system,” said Schmutz. “Building the pan-genome and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … Agency declared the North Railroad Avenue Plume (NRAP) a Superfund site. The chemical PCE (perchloroethylene) found its … the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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