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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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Hidden diversity of soil giant viruses
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit … Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of …
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI … enhance the scientific impact of user projects, develop cutting-edge approaches for and with users, and create … Deputy of Science Programs …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the … constraints, etc. of natural environments shape specific genomic signatures that could be used to hypothesize …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome … in 2014.  Several components of that codebase are no longer supported, and there are now much more powerful and flexible … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Discovering untapped biochemistry in microorganisms from hidden corners
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … award recognizes distinguished research achievements that support open data practices, development of standards and …
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Draft Genome Sequences of Five New Strains of Methylophilaceae Isolated from Lake Washington Sediment
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Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
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