Results

IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the … entire event. All participants are expected to be familiar with this policy. Our aim in hosting an event is to build a …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will … ONGOING ONGOING CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is … JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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