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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … microwell plates, allowing them to be processed at a larger scale through downstream DNA purification and sequencing …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… destroyer” and it has served as just that on a catastrophic scale from Baja California north into Oregon and beyond. The … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
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Insights into the phylogeny and coding potential of microbial dark matter
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … Additionally, insights from the genome could help scale sustainable sugarcane conversion technologies for  … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … In addition to supporting work on the soybean plant in order to maximize yields for biofuel, the JGI has also …
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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