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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Identifying genomic data use with the Data Citation Explorer
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… destroyer” and it has served as just that on a catastrophic scale from Baja California north into Oregon and beyond. The … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … microbial resource that provides information at multiple scales from genes to the community level. The Impact Rivers …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring … the United States Government nor the University of California nor any of their employees, makes any warranty, …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership … of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to … draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to measure the collection … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel … Check out our organism-agnostic CRISPR gRNA design tool  …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Extreme Scale De Novo Metagenome Assembly
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