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I-Min (Amy) Chen
… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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2024 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of … technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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The parallelism motifs of genomic data analysis
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … microbial resource that provides information at multiple scales from genes to the community level. The Impact Rivers …
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Disclaimer
NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring … … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … species).  “This is a great example of developing a large-scale genome infrastructure with a reasonably accessible …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … uses a combination of experimental approaches and large-scale data analysis to better characterize how viruses …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale
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Biases in genome reconstruction from metagenomic data
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