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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock … of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged … model species like P. hallii , researchers can develop crop improvement techniques that could be applied to switchgrass. …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused … Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to … With respect to documents available from this server, neither the United States Government nor the University of California nor any of their employees, makes any warranty, …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from … project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … of multiple forest systems, this work sets up protocols and pipelines that other teams can use around the world. These …
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