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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … Columbia, recently deployed CRAGE to rapidly label  E. coli  in order to monitor population dynamics in co-culture. …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in the … in Indianapolis. During his time in industry, Dr. Mouncey directed R&D teams that focused on the discovery, …
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The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … arc. And so, you know, definitely there has been a strong evolution in terms of the way the group thinks and that the … and go after these sort of new areas of chemistry in a very directed way, which is still inspired by nature, but maybe …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package …
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A global metagenomic map of urban microbiomes and antimicrobial resistance
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … While an ever-increasing number of phage and virus genomes have been assembled and reported …
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