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Unraveling the functional dark matter through global metagenomics
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … contributed toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group …
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Doubling Down on Known Protein Families
… through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing … being able to distinguish which gene belongs to each individual microbial species within a community. Therefore, …
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Synthetic Biology Lab
… pipelines bringing in new technologies, in particular through adoption of lab automation enabling ever-higher levels of throughput. We also develop methods for efficient QA/QC … on developing methods for converting digital information from sequence databases into biotechnological or …
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Open Frameworks Training the Next Generation of Scientists
… Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, training 316 … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to … readily available via the KBase platform. This effort grew from a  modularized training program with the aim for future …
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Giant virus diversity and host interactions through global metagenomics
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Diversity, evolution, and classification of virophages uncovered through global metagenomics
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A Grass Model to Help Improve Giant Miscanthus
… genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …
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AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids
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The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … by Clarivate Analytics. This year’s list features 6,849 individual researchers from 67 countries. Those from the JGI … He was also senior author on a study which identified new genomes highlighting the diversity of white rot fungi in the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … MAGs could also represent composites of populations where individual strains are collapsed, while these issues are not … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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