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Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
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Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and …
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Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland
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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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